Package: conMItion 0.3.1

conMItion: Conditional Mutual Information Estimation for Multi-Omics Data

The biases introduced in association measures, particularly mutual information, are influenced by factors such as tumor purity, mutation burden, and hypermethylation. This package provides the estimation of conditional mutual information (CMI) and its statistical significance with a focus on its application to multi-omics data. Utilizing B-spline functions (inspired by Daub et al. (2004) <doi:10.1186/1471-2105-5-118>), the package offers tools to estimate the association between heterogeneous multi- omics data, while removing the effects of confounding factors. This helps to unravel complex biological interactions. In addition, it includes methods to evaluate the statistical significance of these associations, providing a robust framework for multi-omics data integration and analysis. This package is ideal for researchers in computational biology, bioinformatics, and systems biology seeking a comprehensive tool for understanding interdependencies in omics data.

Authors:Gaojianyong Wang [aut, cre]

conMItion_0.3.1.tar.gz
conMItion_0.3.1.zip(r-4.7)conMItion_0.3.1.zip(r-4.6)conMItion_0.3.1.zip(r-4.5)
conMItion_0.3.1.tgz(r-4.6-x86_64)conMItion_0.3.1.tgz(r-4.6-arm64)conMItion_0.3.1.tgz(r-4.5-x86_64)conMItion_0.3.1.tgz(r-4.5-arm64)
conMItion_0.3.1.tar.gz(r-4.7-arm64)conMItion_0.3.1.tar.gz(r-4.7-x86_64)conMItion_0.3.1.tar.gz(r-4.6-arm64)conMItion_0.3.1.tar.gz(r-4.6-x86_64)
conMItion_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
conMItion/json (API)

# Install 'conMItion' in R:
install.packages('conMItion', repos = c('https://gjywang.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

1.60 score 463 downloads 25 exports 0 dependencies

Last updated from:df6af9b6df. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK130
linux-devel-x86_64OK147
source / vignettesOK132
linux-release-arm64OK130
linux-release-x86_64OK110
macos-release-arm64OK154
macos-release-x86_64OK232
macos-oldrel-arm64OK163
macos-oldrel-x86_64OK401
windows-develOK84
windows-releaseOK77
windows-oldrelOK101
wasm-releaseOK93

Exports:CMIBiCondimat2matCMIBiCondimat2matAllCMIBiCondimat2matPermuCMIBiCondimat2vecCMIBiCondimat2vecPermuCMImat2matCMImat2matAllCMImat2matPermuCMImat2vecCMImat2vecPermuCORmat2vecPermugetCMIgetCMIBiCondigetEntropygetEntropyBigetEntropyQuadrigetEntropyTrigetMIgetMIBigetPValueMImat2matMImat2matAllMImat2matPermuMImat2vecMImat2vecPermu

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Normalized Conditional Mutual Information Between Two Matrices Given Two ConditionsCMIBiCondimat2mat
Normalized Conditional Mutual Information Between Each Row of Two Matrices Given Two ConditionsCMIBiCondimat2matAll
Permuted Conditional Mutual Information Between Two Matrices Given Two ConditionsCMIBiCondimat2matPermu
Normalized Conditional Mutual Information Between Matrix and Vector Given Two ConditionsCMIBiCondimat2vec
Permuted Normalized Conditional Mutual Information Between Matrix and Vector Given Two ConditionsCMIBiCondimat2vecPermu
Normalized Conditional Mutual Information Between Two MatricesCMImat2mat
Normalized Conditional Mutual Information Between Each Row of Two MatricesCMImat2matAll
Permuted Conditional Mutual Information Between Two MatricesCMImat2matPermu
Normalized Conditional Mutual Information Between Matrix and VectorCMImat2vec
Permuted Normalized Conditional Mutual Information Between Matrix and VectorCMImat2vecPermu
Permuted Correlation Between Matrix and VectorCORmat2vecPermu
Calculate Conditional Mutual InformationgetCMI
Calculate Bivariate Conditional Mutual InformationgetCMIBiCondi
Calculate Univariate EntropygetEntropy
Calculate Joint Entropy for Two VariablesgetEntropyBi
Calculate Joint Entropy for Four VariablesgetEntropyQuadri
Calculate Joint Entropy for Three VariablesgetEntropyTri
Calculate Mutual Information Between Two VectorsgetMI
Calculate Joint Mutual InformationgetMIBi
Calculate P-Value from a Sorted DistributiongetPValue
Normalized Mutual Information Between Two MatricesMImat2mat
Normalized Mutual Information Between Each Row of Two MatricesMImat2matAll
Permuted Mutual Information Between Two MatricesMImat2matPermu
Normalized Mutual Information Between Matrix and VectorMImat2vec
Permuted Normalized Mutual Information Between Matrix and VectorMImat2vecPermu